How to handle missing data when using scikit-learn?

Published on Aug. 22, 2023, 12:18 p.m.

There are several ways to handle missing data when using scikit-learn. Some common approaches include:

  1. Deleting rows or columns with missing data: This can be done using the dropna() method in Pandas. However, this approach can lead to loss of information.
  2. Imputing missing values: This involves filling in missing values with estimates based on the available data. Scikit-learn provides several classes for imputing missing values, such as SimpleImputer, KNNImputer, and IterativeImputer.
  3. Ignoring missing values: Some machine learning algorithms can handle missing values directly, and you can simply omit the missing values during training and prediction phases.

Here is an example of using SimpleImputer to impute missing values with the mean:

from sklearn.impute import SimpleImputer
import numpy as np

# create a sample dataset with missing values
X = np.array([[1, 2, np.nan], [4, np.nan, 6], [7, 8, 9]])

# instantiate SimpleImputer and specify strategy
imputer = SimpleImputer(strategy='mean')

# fit and transform the data with the imputer 
X_imputed = imputer.fit_transform(X)

print(X_imputed)

In this example, we are using SimpleImputer to fill missing values with the mean of the available values. The fit_transform() method fits the imputer on the data and applies the imputation.

By using these techniques, you can handle missing data when using scikit-learn for machine learning tasks.

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